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  5. Solyc11g010310.2.1

Solyc11g010310.2.1


Description : E3 ubiquitin ligase (RBR-Helicase)


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0008460 (LandPlants) Phylogenetic Tree(s): OG_05_0008460_tree ,
OG_06_0008037 (SeedPlants) Phylogenetic Tree(s): OG_06_0008037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g010310.2.1
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
AT5G13010 EMB3011 RNA helicase family protein 0.03 Archaeplastida
Cpa|evm.model.tig00000473.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Cre07.g349100 No alias RNA processing.RNA splicing.spliceosome... 0.01 Archaeplastida
Cre24.g755347 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
Gb_34264 No alias E3 ubiquitin ligase (RBR-Helicase) 0.03 Archaeplastida
MA_277016g0010 No alias RNA helicase (Prp2) 0.02 Archaeplastida
MA_34468g0010 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
Mp4g16380.1 No alias RNA helicase (Prp2) 0.02 Archaeplastida
Pp3c24_1890V3.1 No alias RNA helicase family protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005534 galactose binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0016073 snRNA metabolic process IEP Neighborhood
BP GO:0016180 snRNA processing IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034472 snRNA 3'-end processing IEP Neighborhood
BP GO:0034477 U6 snRNA 3'-end processing IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0048029 monosaccharide binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 1574 1628
IPR007502 Helicase-assoc_dom 633 728
IPR011545 DEAD/DEAH_box_helicase_dom 249 399
IPR001650 Helicase_C 453 571
No external refs found!