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  4. Sequence
  5. Solyc11g011290.3.1

Solyc11g011290.3.1


Description : no hits & (original description: none)


Gene families : OG0000794 (Archaeplastida) Phylogenetic Tree(s): OG0000794_tree ,
OG_05_0000615 (LandPlants) Phylogenetic Tree(s): OG_05_0000615_tree ,
OG_06_0000503 (SeedPlants) Phylogenetic Tree(s): OG_06_0000503_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g011290.3.1
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00191970 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT2G22620 No alias Rhamnogalacturonate lyase family protein 0.03 Archaeplastida
AT4G37950 No alias Rhamnogalacturonate lyase family protein 0.03 Archaeplastida
AT4G38030 No alias Rhamnogalacturonate lyase family protein 0.05 Archaeplastida
GSVIVT01006298001 No alias No description available 0.03 Archaeplastida
GSVIVT01006302001 No alias No description available 0.03 Archaeplastida
GSVIVT01012710001 No alias No description available 0.03 Archaeplastida
Gb_00786 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_00787 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os08g44040.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os12g03790.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp2g13570.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp2g13580.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp3g03160.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp5g20220.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp7g03130.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp7g11130.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c4_23770V3.1 No alias Rhamnogalacturonate lyase family protein 0.05 Archaeplastida
Smo413798 No alias No description available 0.06 Archaeplastida
Zm00001e013992_P006 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e021493_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019321 pentose metabolic process IEP Neighborhood
BP GO:0019566 arabinose metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0046373 L-arabinose metabolic process IEP Neighborhood
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR029411 RG-lyase_III 443 631
IPR029413 RG-lyase_II 357 430
IPR010325 Rhamnogal_lyase 42 232
No external refs found!