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  5. Solyc11g011300.2.1

Solyc11g011300.2.1


Description : no hits & (original description: none)


Gene families : OG0000794 (Archaeplastida) Phylogenetic Tree(s): OG0000794_tree ,
OG_05_0000615 (LandPlants) Phylogenetic Tree(s): OG_05_0000615_tree ,
OG_06_0000503 (SeedPlants) Phylogenetic Tree(s): OG_06_0000503_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g011300.2.1
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00191970 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00046p00193590 evm_27.TU.AmTr_v1... No description available 0.06 Archaeplastida
AT1G09880 No alias Rhamnogalacturonate lyase family protein 0.03 Archaeplastida
AT2G22620 No alias Rhamnogalacturonate lyase family protein 0.02 Archaeplastida
AT4G24430 No alias Rhamnogalacturonate lyase family protein 0.03 Archaeplastida
AT4G38030 No alias Rhamnogalacturonate lyase family protein 0.02 Archaeplastida
GSVIVT01006298001 No alias No description available 0.06 Archaeplastida
GSVIVT01006302001 No alias No description available 0.05 Archaeplastida
GSVIVT01012710001 No alias No description available 0.05 Archaeplastida
Gb_00786 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_00787 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os08g44040.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os12g03790.1 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_10427585g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c4_23770V3.1 No alias Rhamnogalacturonate lyase family protein 0.02 Archaeplastida
Smo413794 No alias No description available 0.06 Archaeplastida
Smo413798 No alias No description available 0.05 Archaeplastida
Solyc12g088050.2.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e013992_P006 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR010325 Rhamnogal_lyase 45 243
IPR029413 RG-lyase_II 398 469
IPR029411 RG-lyase_III 483 672
No external refs found!