1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g013370.3.1

Solyc11g013370.3.1


Description : RING-HC-class E3 ligase


Gene families : OG0001773 (Archaeplastida) Phylogenetic Tree(s): OG0001773_tree ,
OG_05_0002127 (LandPlants) Phylogenetic Tree(s): OG_05_0002127_tree ,
OG_06_0002842 (SeedPlants) Phylogenetic Tree(s): OG_06_0002842_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g013370.3.1
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00181670 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa... 0.02 Archaeplastida
Gb_15023 No alias RING-HC-class E3 ligase 0.04 Archaeplastida
Gb_28646 No alias RING-HC-class E3 ligase 0.03 Archaeplastida
MA_10425980g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10433679g0010 No alias RING-HC-class E3 ligase 0.02 Archaeplastida
Smo175555 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
CC GO:0030906 retromer, cargo-selective complex IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0034508 centromere complex assembly IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!