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  5. Solyc11g022610.1.1

Solyc11g022610.1.1


Description : 30S ribosomal protein S4, chloroplastic OS=Solanum lycopersicum (sp|q2mi98|rr4_sollc : 114.0)


Gene families : OG0003680 (Archaeplastida) Phylogenetic Tree(s): OG0003680_tree ,
OG_05_0110945 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0088927 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g022610.1.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
ATCG00380 RPS4 chloroplast ribosomal protein S4 0.05 Archaeplastida
Gb_06832 No alias component psRPS4 of small ribosomal subunit proteome 0.11 Archaeplastida
Gb_11360 No alias component psRPS4 of small ribosomal subunit proteome 0.05 Archaeplastida
LOC_Os04g16738.1 No alias component psRPS4 of small ribosomal subunit proteome 0.08 Archaeplastida
LOC_Os04g16764.1 No alias component psRPS4 of small ribosomal subunit proteome 0.08 Archaeplastida
LOC_Os10g38214.1 No alias component psRPS4 of small ribosomal subunit proteome 0.08 Archaeplastida
Solyc00g500060.1.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Solyc00g500143.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc09g015330.2.1 No alias no hits & (original description: none) 0.1 Archaeplastida
Zm00001e003895_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.13 Archaeplastida
Zm00001e003908_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.13 Archaeplastida
Zm00001e013560_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.05 Archaeplastida
Zm00001e042033_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.13 Archaeplastida
Zm00001e042054_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.13 Archaeplastida
Zm00001e042078_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.13 Archaeplastida
Zm00001e042098_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.13 Archaeplastida
Zm00001e042236_P001 No alias No annotation 0.02 Archaeplastida
Zm00001e042353_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.13 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006164 purine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0006754 ATP biosynthetic process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009123 nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009141 nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009150 purine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009165 nucleotide biosynthetic process IEP Neighborhood
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
BP GO:0009260 ribonucleotide biosynthetic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009767 photosynthetic electron transport chain IEP Neighborhood
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0019684 photosynthesis, light reaction IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Neighborhood
BP GO:0046034 ATP metabolic process IEP Neighborhood
BP GO:0046390 ribose phosphate biosynthetic process IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
BP GO:0072522 purine-containing compound biosynthetic process IEP Neighborhood
BP GO:0090407 organophosphate biosynthetic process IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Neighborhood
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 11 88
No external refs found!