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  5. Solyc11g042610.2.1

Solyc11g042610.2.1


Description : component RPS5 of SSU proteome


Gene families : OG0002222 (Archaeplastida) Phylogenetic Tree(s): OG0002222_tree ,
OG_05_0002391 (LandPlants) Phylogenetic Tree(s): OG_05_0002391_tree ,
OG_06_0003818 (SeedPlants) Phylogenetic Tree(s): OG_06_0003818_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g042610.2.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00119380 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 Archaeplastida
AMTR_s00090p00050460 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 Archaeplastida
AT2G37270 RPS5B, ATRPS5B ribosomal protein 5B 0.36 Archaeplastida
AT3G11940 AML1, RPS5A, ATRPS5A ribosomal protein 5A 0.38 Archaeplastida
Cpa|evm.model.tig00021332.10 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.3 Archaeplastida
Cre06.g290950 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.26 Archaeplastida
GSVIVT01026328001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.3 Archaeplastida
GSVIVT01033419001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.33 Archaeplastida
Gb_04954 No alias component RPS5 of SSU proteome 0.14 Archaeplastida
Gb_10560 No alias component RPS5 of SSU proteome 0.05 Archaeplastida
Gb_10561 No alias component RPS5 of SSU proteome 0.11 Archaeplastida
LOC_Os01g01060.1 No alias component RPS5 of SSU proteome 0.22 Archaeplastida
LOC_Os11g29190.1 No alias component RPS5 of SSU proteome 0.19 Archaeplastida
MA_10428487g0010 No alias component RPS5 of SSU proteome 0.2 Archaeplastida
Mp3g10570.1 No alias component RPS5 of SSU proteome 0.4 Archaeplastida
Pp3c20_18970V3.1 No alias ribosomal protein 5B 0.23 Archaeplastida
Pp3c23_6150V3.1 No alias ribosomal protein 5B 0.24 Archaeplastida
Pp3c24_18880V3.1 No alias ribosomal protein 5B 0.2 Archaeplastida
Pp3c8_16820V3.1 No alias ribosomal protein 5B 0.33 Archaeplastida
Pp3c8_16860V3.1 No alias ribosomal protein 5B 0.23 Archaeplastida
Smo164593 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.24 Archaeplastida
Smo271466 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 Archaeplastida
Zm00001e025608_P002 No alias component RPS5 of SSU proteome 0.33 Archaeplastida
Zm00001e031425_P002 No alias component RPS5 of SSU proteome 0.37 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0031167 rRNA methylation IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0036265 RNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0070475 rRNA base methylation IEP Neighborhood
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR023798 Ribosomal_S7_dom 66 211
No external refs found!