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  5. Solyc11g045130.2.1

Solyc11g045130.2.1


Description : Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana (sp|q9skz2|caf1g_arath : 429.0)


Gene families : OG0000981 (Archaeplastida) Phylogenetic Tree(s): OG0000981_tree ,
OG_05_0001237 (LandPlants) Phylogenetic Tree(s): OG_05_0001237_tree ,
OG_06_0001421 (SeedPlants) Phylogenetic Tree(s): OG_06_0001421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g045130.2.1
Cluster HCCA: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
AT3G44260 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.03 Archaeplastida
AT5G22250 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.04 Archaeplastida
Cre03.g157300 No alias Probable CCR4-associated factor 1 homolog 7... 0.02 Archaeplastida
GSVIVT01035897001 No alias Probable CCR4-associated factor 1 homolog 10... 0.03 Archaeplastida
Gb_19103 No alias deadenylase component CAF1 of CCR4-NOT complex 0.03 Archaeplastida
LOC_Os02g55300.1 No alias Probable CCR4-associated factor 1 homolog 7... 0.03 Archaeplastida
LOC_Os04g58810.1 No alias Probable CCR4-associated factor 1 homolog 11... 0.02 Archaeplastida
MA_127412g0020 No alias Probable CCR4-associated factor 1 homolog 7... 0.04 Archaeplastida
MA_205414g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.04 Archaeplastida
MA_2937g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.04 Archaeplastida
MA_5937864g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.05 Archaeplastida
MA_9777560g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.03 Archaeplastida
Mp8g01530.1 No alias Probable CCR4-associated factor 1 homolog 6... 0.02 Archaeplastida
Pp3c21_18060V3.1 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.05 Archaeplastida
Solyc06g074030.1.1 No alias deadenylase component CAF1 of CCR4-NOT complex 0.03 Archaeplastida
Zm00001e022474_P001 No alias Probable CCR4-associated factor 1 homolog 6... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
BP GO:0051259 protein complex oligomerization IEP Neighborhood
BP GO:0051260 protein homooligomerization IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 15 136
IPR006941 RNase_CAF1 161 243
No external refs found!