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  5. Solyc11g064750.3.1

Solyc11g064750.3.1


Description : Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana (sp|q9sjg6|pp200_arath : 575.0)


Gene families : OG0012183 (Archaeplastida) Phylogenetic Tree(s): OG0012183_tree ,
OG_05_0010583 (LandPlants) Phylogenetic Tree(s): OG_05_0010583_tree ,
OG_06_0010260 (SeedPlants) Phylogenetic Tree(s): OG_06_0010260_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g064750.3.1
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AT2G42920 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Archaeplastida
GSVIVT01020874001 No alias Pentatricopeptide repeat-containing protein At2g42920,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
MF GO:0046422 violaxanthin de-epoxidase activity IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 186 232
IPR002885 Pentatricopeptide_repeat 325 351
IPR002885 Pentatricopeptide_repeat 157 185
IPR002885 Pentatricopeptide_repeat 129 150
IPR002885 Pentatricopeptide_repeat 260 281
IPR002885 Pentatricopeptide_repeat 290 315
IPR002885 Pentatricopeptide_repeat 362 387
IPR002885 Pentatricopeptide_repeat 55 82
No external refs found!