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  5. Solyc11g065160.3.1

Solyc11g065160.3.1


Description : PHD finger transcription factor


Gene families : OG0003118 (Archaeplastida) Phylogenetic Tree(s): OG0003118_tree ,
OG_05_0002467 (LandPlants) Phylogenetic Tree(s): OG_05_0002467_tree ,
OG_06_0002003 (SeedPlants) Phylogenetic Tree(s): OG_06_0002003_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g065160.3.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AT5G12400 No alias DNA binding;zinc ion binding;DNA binding 0.08 Archaeplastida
AT5G35210 No alias metalloendopeptidases;zinc ion binding;DNA binding 0.07 Archaeplastida
GSVIVT01031411001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.05 Archaeplastida
GSVIVT01037231001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.08 Archaeplastida
Gb_21810 No alias PHD finger transcription factor 0.03 Archaeplastida
LOC_Os11g05130.1 No alias PHD finger transcription factor 0.08 Archaeplastida
MA_10689g0010 No alias PHD finger transcription factor 0.03 Archaeplastida
Mp4g03480.1 No alias PHD finger transcription factor 0.05 Archaeplastida
Pp3c7_5480V3.1 No alias metalloendopeptidases;zinc ion binding;DNA binding 0.06 Archaeplastida
Zm00001e009150_P001 No alias No annotation 0.1 Archaeplastida
Zm00001e035778_P001 No alias PHD finger transcription factor 0.06 Archaeplastida
Zm00001e039352_P001 No alias No annotation 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0031023 microtubule organizing center organization IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR018501 DDT_dom 245 298
IPR019787 Znf_PHD-finger 439 481
No external refs found!