Solyc11g065670.1.1

Description : component RPL12 of LSU proteome component

Gene families : OG0002167 (Archaeplastida) Phylogenetic Tree(s): OG0002167_tree ,
OG_05_0002069 (LandPlants) Phylogenetic Tree(s): OG_05_0002069_tree ,
OG_06_0002451 (SeedPlants) Phylogenetic Tree(s): OG_06_0002451_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc11g065670.1.1
Cluster	HCCA: Cluster_222

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00105p00048810	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.23	Archaeplastida
AMTR_s00148p00026900	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	Archaeplastida
AT2G37190	No alias	Ribosomal protein L11 family protein	0.38	Archaeplastida
AT3G53430	No alias	Ribosomal protein L11 family protein	0.13	Archaeplastida
AT5G60670	No alias	Ribosomal protein L11 family protein	0.29	Archaeplastida
Cpa\|evm.model.tig00001339.27	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.21	Archaeplastida
Cre12.g528750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.3	Archaeplastida
GSVIVT01016274001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	Archaeplastida
GSVIVT01025189001	No alias	No description available	0.19	Archaeplastida
GSVIVT01025683001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	Archaeplastida
LOC_Os02g47140.1	No alias	component RPL12 of LSU proteome component	0.23	Archaeplastida
LOC_Os04g50990.1	No alias	component RPL12 of LSU proteome component	0.34	Archaeplastida
MA_10427147g0010	No alias	component RPL12 of LSU proteome component	0.3	Archaeplastida
Mp3g02020.1	No alias	component RPL12 of LSU proteome component	0.33	Archaeplastida
Pp3c15_14410V3.1	No alias	Ribosomal protein L11 family protein	0.3	Archaeplastida
Pp3c16_2860V3.1	No alias	Ribosomal protein L11 family protein	0.21	Archaeplastida
Pp3c27_660V3.1	No alias	Ribosomal protein L11 family protein	0.29	Archaeplastida
Pp3c6_19290V3.1	No alias	Ribosomal protein L11 family protein	0.18	Archaeplastida
Pp3c9_15380V3.1	No alias	Ribosomal protein L11 family protein	0.25	Archaeplastida
Smo227409	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	Archaeplastida
Zm00001e007067_P001	No alias	component RPL12 of LSU proteome component	0.15	Archaeplastida
Zm00001e008316_P001	No alias	component RPL12 of LSU proteome component	0.17	Archaeplastida
Zm00001e023297_P001	No alias	component RPL12 of LSU proteome component	0.24	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0003848	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	IEP	Neighborhood
MF	GO:0004055	argininosuccinate synthase activity	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0006525	arginine metabolic process	IEP	Neighborhood
BP	GO:0006526	arginine biosynthetic process	IEP	Neighborhood
BP	GO:0006553	lysine metabolic process	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Neighborhood
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Neighborhood
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	Neighborhood
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009085	lysine biosynthetic process	IEP	Neighborhood
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Neighborhood
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016778	diphosphotransferase activity	IEP	Neighborhood
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
BP	GO:0044283	small molecule biosynthetic process	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0046451	diaminopimelate metabolic process	IEP	Neighborhood
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Neighborhood
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR020783	Ribosomal_L11_C	75	144
IPR020784	Ribosomal_L11_N	9	70

External Links

No external refs found!

Solyc11g065670.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation