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  5. Solyc12g005020.2.1

Solyc12g005020.2.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0001256 (LandPlants) Phylogenetic Tree(s): OG_05_0001256_tree ,
OG_06_0017004 (SeedPlants) Phylogenetic Tree(s): OG_06_0017004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g005020.2.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00161410 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00001p00271850 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT3G03550 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G30370 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT5G58580 ATL63, TL63 TOXICOS EN LEVADURA 63 0.02 Archaeplastida
GSVIVT01013145001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
GSVIVT01022306001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
Gb_08091 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_20461 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os01g53500.1 No alias RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os02g36300.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g45390.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g45710.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os02g46340.1 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os08g06090.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os09g30160.1 No alias ubiquitin protein ligase (XERICO) 0.02 Archaeplastida
LOC_Os12g01750.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_159453g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_229590g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_3929631g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_569551g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_904294g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc01g088440.2.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc03g032060.1.1 No alias RING-H2 finger protein ATL80 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Solyc09g066300.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e015259_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e016474_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e020958_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e021729_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e034469_P001 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
Zm00001e036289_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e037107_P001 No alias RING-H2-class E3 ligase 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 177 220
No external refs found!