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  5. Solyc12g005330.2.1

Solyc12g005330.2.1


Description : component RPL8 of LSU proteome component


Gene families : OG0001917 (Archaeplastida) Phylogenetic Tree(s): OG0001917_tree ,
OG_05_0001773 (LandPlants) Phylogenetic Tree(s): OG_05_0001773_tree ,
OG_06_0001930 (SeedPlants) Phylogenetic Tree(s): OG_06_0001930_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g005330.2.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00109050 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
AT2G18020 EMB2296 Ribosomal protein L2 family 0.28 Archaeplastida
AT3G51190 No alias Ribosomal protein L2 family 0.03 Archaeplastida
AT4G36130 No alias Ribosomal protein L2 family 0.27 Archaeplastida
Cpa|evm.model.tig00020965.22 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.34 Archaeplastida
Cre12.g535851 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.34 Archaeplastida
GSVIVT01014552001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
LOC_Os12g38000.1 No alias component RPL8 of LSU proteome component 0.25 Archaeplastida
MA_10431163g0010 No alias component RPL8 of LSU proteome component 0.09 Archaeplastida
MA_219740g0010 No alias component RPL8 of LSU proteome component 0.1 Archaeplastida
MA_307029g0010 No alias component RPL8 of LSU proteome component 0.04 Archaeplastida
Mp7g01860.1 No alias component RPL8 of LSU proteome component 0.38 Archaeplastida
Mp7g08730.1 No alias component RPL8 of LSU proteome component 0.37 Archaeplastida
Pp3c12_10200V3.1 No alias Ribosomal protein L2 family 0.2 Archaeplastida
Pp3c13_21760V3.1 No alias Ribosomal protein L2 family 0.33 Archaeplastida
Pp3c13_23630V3.1 No alias Ribosomal protein L2 family 0.29 Archaeplastida
Pp3c4_12690V3.1 No alias Ribosomal protein L2 family 0.24 Archaeplastida
Pp3c4_12720V3.1 No alias Ribosomal protein L2 family 0.24 Archaeplastida
Smo170971 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
Zm00001e002931_P001 No alias component RPL8 of LSU proteome component 0.27 Archaeplastida
Zm00001e018178_P001 No alias component RPL8 of LSU proteome component 0.18 Archaeplastida
Zm00001e033350_P001 No alias component RPL8 of LSU proteome component 0.31 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 98 230
IPR022666 Rbsml_prot_L2_RNA-bd_dom 13 90
No external refs found!