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  5. Solyc12g005510.3.1

Solyc12g005510.3.1


Description : no hits & (original description: none)


Gene families : OG0000125 (Archaeplastida) Phylogenetic Tree(s): OG0000125_tree ,
OG_05_0000151 (LandPlants) Phylogenetic Tree(s): OG_05_0000151_tree ,
OG_06_0000175 (SeedPlants) Phylogenetic Tree(s): OG_06_0000175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g005510.3.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT1G36950 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT3G47180 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G07225 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Solyc09g007530.3.1 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 136 178
IPR018853 DUF2457 34 109
No external refs found!