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  5. Solyc12g017830.3.1

Solyc12g017830.3.1


Description : BIG-type ARF-GTPase guanyl-nucleotide exchange factor


Gene families : OG0001057 (Archaeplastida) Phylogenetic Tree(s): OG0001057_tree ,
OG_05_0005925 (LandPlants) Phylogenetic Tree(s): OG_05_0005925_tree ,
OG_06_0007536 (SeedPlants) Phylogenetic Tree(s): OG_06_0007536_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g017830.3.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00145310 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 Archaeplastida
AMTR_s00041p00031550 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 Archaeplastida
AMTR_s00131p00043500 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 Archaeplastida
AT1G01960 EDA10 SEC7-like guanine nucleotide exchange family protein 0.14 Archaeplastida
AT3G43300 ATMIN7, BEN1 HOPM interactor 7 0.2 Archaeplastida
AT3G60860 No alias SEC7-like guanine nucleotide exchange family protein 0.18 Archaeplastida
AT4G38200 No alias SEC7-like guanine nucleotide exchange family protein 0.19 Archaeplastida
Cpa|evm.model.tig00000852.23 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 Archaeplastida
Cre09.g390319 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.08 Archaeplastida
GSVIVT01014993001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.11 Archaeplastida
GSVIVT01023854001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.18 Archaeplastida
GSVIVT01027623001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.15 Archaeplastida
Gb_04048 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.08 Archaeplastida
Gb_07642 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.1 Archaeplastida
Gb_26513 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.1 Archaeplastida
LOC_Os03g14260.1 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.17 Archaeplastida
LOC_Os07g37750.1 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.24 Archaeplastida
MA_10429864g0010 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.1 Archaeplastida
MA_20138g0010 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.08 Archaeplastida
MA_20563g0010 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.09 Archaeplastida
Mp7g11590.1 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.09 Archaeplastida
Mp8g18220.1 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.15 Archaeplastida
Pp3c11_12270V3.1 No alias SEC7-like guanine nucleotide exchange family protein 0.07 Archaeplastida
Pp3c18_8290V3.1 No alias HOPM interactor 7 0.02 Archaeplastida
Pp3c7_14180V3.1 No alias SEC7-like guanine nucleotide exchange family protein 0.13 Archaeplastida
Smo173646 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 Archaeplastida
Smo85621 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 Archaeplastida
Zm00001e001058_P001 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.21 Archaeplastida
Zm00001e010568_P001 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.26 Archaeplastida
Zm00001e025045_P001 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.03 Archaeplastida
Zm00001e035267_P004 No alias No annotation 0.27 Archaeplastida
Zm00001e037574_P001 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.26 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEA Interproscan
BP GO:0032012 regulation of ARF protein signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Neighborhood
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005801 cis-Golgi network IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0007030 Golgi organization IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
CC GO:0030906 retromer, cargo-selective complex IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:1901567 fatty acid derivative binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR032629 DCB_dom 111 251
IPR032817 Mon2_C 1248 1311
IPR032691 Sec7_N 354 502
IPR015403 Sec7_C 1092 1174
IPR000904 Sec7_dom 598 779
No external refs found!