Solyc12g019100.2.1

Description : Valine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana (sp|f4ke63|syvm2_arath : 456.0)

Gene families : OG0001405 (Archaeplastida) Phylogenetic Tree(s): OG0001405_tree ,
OG_05_0005398 (LandPlants) Phylogenetic Tree(s): OG_05_0005398_tree ,
OG_06_0004970 (SeedPlants) Phylogenetic Tree(s): OG_06_0004970_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc12g019100.2.1
Cluster	HCCA: Cluster_169

Target	Alias	Description	ECC score	Gene Family Method
AT5G16715	EMB2247	ATP binding;valine-tRNA ligases;aminoacyl-tRNA...	0.19	Archaeplastida
Cpa\|evm.model.tig00000402.37	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.03	Archaeplastida
Cpa\|evm.model.tig00001130.5	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	Archaeplastida
Cre07.g350500	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.09	Archaeplastida
Cre12.g537100	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.03	Archaeplastida
Gb_39267	No alias	valine-tRNA ligase	0.07	Archaeplastida
LOC_Os07g06940.1	No alias	valine-tRNA ligase	0.02	Archaeplastida
MA_175189g0010	No alias	valine-tRNA ligase	0.03	Archaeplastida
MA_374514g0010	No alias	Valine--tRNA ligase, chloroplastic/mitochondrial 2...	0.04	Archaeplastida
Mp2g20730.1	No alias	valine-tRNA ligase	0.1	Archaeplastida
Pp3c12_13790V3.1	No alias	ATP binding;valine-tRNA ligases;aminoacyl-tRNA...	0.1	Archaeplastida
Zm00001e010301_P002	No alias	valine-tRNA ligase	0.03	Archaeplastida
Zm00001e011483_P001	No alias	valine-tRNA ligase	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004366	glycerol-3-phosphate O-acyltransferase activity	IEP	Neighborhood
MF	GO:0004751	ribose-5-phosphate isomerase activity	IEP	Neighborhood
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Neighborhood
MF	GO:0004832	valine-tRNA ligase activity	IEP	Neighborhood
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Neighborhood
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
MF	GO:0008374	O-acyltransferase activity	IEP	Neighborhood
BP	GO:0009052	pentose-phosphate shunt, non-oxidative branch	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Neighborhood
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Neighborhood
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Neighborhood
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Neighborhood
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Neighborhood
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002300	aa-tRNA-synth_Ia	94	320

External Links

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Solyc12g019100.2.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation