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  5. Solyc12g019960.2.1

Solyc12g019960.2.1


Description : SMG7 Nonsense-Mediated mRNA Decay protein


Gene families : OG0002555 (Archaeplastida) Phylogenetic Tree(s): OG0002555_tree ,
OG_05_0002119 (LandPlants) Phylogenetic Tree(s): OG_05_0002119_tree ,
OG_06_0006148 (SeedPlants) Phylogenetic Tree(s): OG_06_0006148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g019960.2.1
Cluster HCCA: Cluster_263

Target Alias Description ECC score Gene Family Method Actions
AT5G19400 SMG7 Telomerase activating protein Est1 0.03 Archaeplastida
Cre16.g648750 No alias Protein SMG7 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01033622001 No alias RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.03 Archaeplastida
GSVIVT01037278001 No alias RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.07 Archaeplastida
Gb_21699 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.04 Archaeplastida
Gb_32124 No alias Protein SMG7 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_32980g0010 No alias Protein SMG7 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp8g12080.1 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.04 Archaeplastida
Pp3c7_5420V3.1 No alias Telomerase activating protein Est1 0.02 Archaeplastida
Smo410159 No alias RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.04 Archaeplastida
Zm00001e009613_P002 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
InterPro domains Description Start Stop
IPR018834 DNA/RNA-bd_Est1-type 205 540
IPR019458 EST1 70 191
No external refs found!