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  5. Solyc12g035250.3.1

Solyc12g035250.3.1


Description : Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis thaliana (sp|q9lvx1|c3h41_arath : 487.0)


Gene families : OG0003907 (Archaeplastida) Phylogenetic Tree(s): OG0003907_tree ,
OG_05_0003938 (LandPlants) Phylogenetic Tree(s): OG_05_0003938_tree ,
OG_06_0005927 (SeedPlants) Phylogenetic Tree(s): OG_06_0005927_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g035250.3.1
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
AT3G27700 No alias zinc finger (CCCH-type) family protein / RNA recognition... 0.05 Archaeplastida
GSVIVT01032423001 No alias Zinc finger CCCH domain-containing protein 41... 0.03 Archaeplastida
Gb_29092 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.04 Archaeplastida
LOC_Os04g32340.1 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.03 Archaeplastida
MA_255786g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_33944g0010 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.04 Archaeplastida
Mp5g00230.1 No alias Zinc finger CCCH domain-containing protein 41... 0.04 Archaeplastida
Pp3c1_20440V3.1 No alias zinc finger (CCCH-type) family protein / RNA recognition... 0.02 Archaeplastida
Pp3c2_22950V3.1 No alias zinc finger (CCCH-type) family protein / RNA recognition... 0.04 Archaeplastida
Smo437689 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.05 Archaeplastida
Zm00001e008334_P001 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 468 530
No external refs found!