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  5. Solyc12g035520.3.1

Solyc12g035520.3.1


Description : transcription factor (CAMTA)


Gene families : OG0000551 (Archaeplastida) Phylogenetic Tree(s): OG0000551_tree ,
OG_05_0000809 (LandPlants) Phylogenetic Tree(s): OG_05_0000809_tree ,
OG_06_0003865 (SeedPlants) Phylogenetic Tree(s): OG_06_0003865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g035520.3.1
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
Pp3c3_35530V3.1 No alias signal responsive 1 0.04 Archaeplastida
Zm00001e008367_P002 No alias transcription factor (CAMTA) 0.04 Archaeplastida
Zm00001e040752_P001 No alias transcription factor (CAMTA) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000976 transcription regulatory region sequence-specific DNA binding IEP Neighborhood
MF GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEP Neighborhood
MF GO:0001012 RNA polymerase II regulatory region DNA binding IEP Neighborhood
MF GO:0001067 regulatory region nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032422 purine-rich negative regulatory element binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
MF GO:0044212 transcription regulatory region DNA binding IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0071586 CAAX-box protein processing IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR005559 CG-1_dom 16 127
IPR000048 IQ_motif_EF-hand-BS 818 836
IPR000048 IQ_motif_EF-hand-BS 841 860
IPR002909 IPT_dom 407 490
No external refs found!