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  5. Solyc12g038980.2.1

Solyc12g038980.2.1


Description : protein factor NHP2L1/SNU13 of U4/U6 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0001139 (Archaeplastida) Phylogenetic Tree(s): OG0001139_tree ,
OG_05_0004607 (LandPlants) Phylogenetic Tree(s): OG_05_0004607_tree ,
OG_06_0004849 (SeedPlants) Phylogenetic Tree(s): OG_06_0004849_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g038980.2.1
Cluster HCCA: Cluster_222

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00261410 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 Archaeplastida
AMTR_s00029p00103630 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.02 Archaeplastida
AMTR_s00043p00189790 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.11 Archaeplastida
AT4G12600 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.23 Archaeplastida
AT4G22380 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.03 Archaeplastida
AT5G08180 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.26 Archaeplastida
AT5G20160 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.29 Archaeplastida
Cpa|evm.model.tig00000600.11 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
Cre06.g249250 No alias RNA processing.RNA modification.rRNA/tRNA... 0.19 Archaeplastida
GSVIVT01008187001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.15 Archaeplastida
GSVIVT01015520001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.04 Archaeplastida
Gb_26398 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.05 Archaeplastida
LOC_Os03g13800.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.21 Archaeplastida
LOC_Os06g16290.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.24 Archaeplastida
LOC_Os10g03540.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.07 Archaeplastida
MA_141850g0010 No alias No annotation 0.05 Archaeplastida
MA_16906g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.2 Archaeplastida
MA_433779g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.11 Archaeplastida
MA_670271g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.04 Archaeplastida
MA_99460g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.12 Archaeplastida
Mp7g12360.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.07 Archaeplastida
Mp8g07360.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.08 Archaeplastida
Pp3c15_25080V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.06 Archaeplastida
Pp3c17_18010V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.06 Archaeplastida
Pp3c17_18050V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.11 Archaeplastida
Pp3c9_25980V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.06 Archaeplastida
Smo159569 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
Smo98161 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.1 Archaeplastida
Zm00001e001004_P001 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.11 Archaeplastida
Zm00001e015712_P001 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida
Zm00001e023454_P001 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.02 Archaeplastida
Zm00001e038611_P002 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.22 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 36 122
No external refs found!