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  5. Solyc12g088500.2.1

Solyc12g088500.2.1


Description : cyclin (CYCA)


Gene families : OG0000635 (Archaeplastida) Phylogenetic Tree(s): OG0000635_tree ,
OG_05_0000438 (LandPlants) Phylogenetic Tree(s): OG_05_0000438_tree ,
OG_06_0000371 (SeedPlants) Phylogenetic Tree(s): OG_06_0000371_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g088500.2.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272790 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 Archaeplastida
AT1G47210 CYCA3;2 cyclin-dependent protein kinase 3;2 0.06 Archaeplastida
AT5G43080 CYCA3;1 Cyclin A3;1 0.1 Archaeplastida
Cpa|evm.model.tig00000076.67 No alias Cyclin-A2-1 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
Cre03.g207900 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 Archaeplastida
GSVIVT01008823001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.04 Archaeplastida
GSVIVT01009399001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.06 Archaeplastida
GSVIVT01035718001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.11 Archaeplastida
Gb_03779 No alias cyclin (CYCA) 0.02 Archaeplastida
Gb_07594 No alias cyclin (CYCA) 0.02 Archaeplastida
Gb_09733 No alias cyclin (CYCA) 0.03 Archaeplastida
Gb_21011 No alias cyclin (CYCA) 0.05 Archaeplastida
LOC_Os01g13260.1 No alias cyclin (CYCA) 0.04 Archaeplastida
LOC_Os03g41100.1 No alias cyclin (CYCA) 0.06 Archaeplastida
LOC_Os12g31810.1 No alias cyclin (CYCA) 0.04 Archaeplastida
LOC_Os12g39210.1 No alias cyclin (CYCA) 0.02 Archaeplastida
MA_28323g0010 No alias cyclin (CYCA) 0.03 Archaeplastida
MA_6619g0010 No alias cyclin (CYCA) 0.03 Archaeplastida
MA_88982g0010 No alias cyclin (CYCA) 0.02 Archaeplastida
Mp2g25500.1 No alias cyclin (CYCA) 0.07 Archaeplastida
Pp3c1_39100V3.1 No alias Cyclin A1;1 0.06 Archaeplastida
Smo442428 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.04 Archaeplastida
Smo97411 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 Archaeplastida
Zm00001e003049_P002 No alias cyclin (CYCA) 0.02 Archaeplastida
Zm00001e005138_P001 No alias cyclin (CYCA) 0.05 Archaeplastida
Zm00001e012454_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
CC GO:0000808 origin recognition complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
CC GO:0005664 nuclear origin of replication recognition complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
CC GO:0032299 ribonuclease H2 complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 219 341
IPR006671 Cyclin_N 88 216
No external refs found!