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  5. Solyc12g088740.2.1

Solyc12g088740.2.1


Description : Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana (sp|q9fmm4|rhg1a_arath : 211.0)


Gene families : OG0000125 (Archaeplastida) Phylogenetic Tree(s): OG0000125_tree ,
OG_05_0000151 (LandPlants) Phylogenetic Tree(s): OG_05_0000151_tree ,
OG_06_0000175 (SeedPlants) Phylogenetic Tree(s): OG_06_0000175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g088740.2.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01020798001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
LOC_Os05g48970.1 No alias Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.03 Archaeplastida
Smo447294 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc07g062720.3.1 No alias Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.03 Archaeplastida
Zm00001e000545_P002 No alias E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0010921 regulation of phosphatase activity IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0019902 phosphatase binding IEP Neighborhood
MF GO:0019903 protein phosphatase binding IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0035303 regulation of dephosphorylation IEP Neighborhood
BP GO:0035304 regulation of protein dephosphorylation IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051336 regulation of hydrolase activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 646 687
No external refs found!