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  5. Solyc12g098460.2.1

Solyc12g098460.2.1


Description : AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana (sp|q9c688|ravl3_arath : 91.3)


Gene families : OG0000363 (Archaeplastida) Phylogenetic Tree(s): OG0000363_tree ,
OG_05_0000191 (LandPlants) Phylogenetic Tree(s): OG_05_0000191_tree ,
OG_06_0005259 (SeedPlants) Phylogenetic Tree(s): OG_06_0005259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g098460.2.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00238950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.05 Archaeplastida
GSVIVT01033902001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
GSVIVT01036447001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.05 Archaeplastida
LOC_Os01g04750.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
LOC_Os05g47650.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
LOC_Os08g06120.1 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
LOC_Os10g39190.1 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida
LOC_Os11g05740.1 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
LOC_Os12g06080.1 No alias transcription factor (RAV/NGATHA) 0.05 Archaeplastida
MA_10428163g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
MA_10432625g0010 No alias transcription factor (AP2-RAV) 0.02 Archaeplastida
MA_246350g0010 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
MA_953813g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c2_23660V3.1 No alias AP2/B3 transcription factor family protein 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 38 122
No external refs found!