Solyc12g098700.1.1

Description : RNA helicase (Prp5)

Gene families : OG0005527 (Archaeplastida) Phylogenetic Tree(s): OG0005527_tree ,
OG_05_0005768 (LandPlants) Phylogenetic Tree(s): OG_05_0005768_tree ,
OG_06_0007757 (SeedPlants) Phylogenetic Tree(s): OG_06_0007757_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc12g098700.1.1
Cluster	HCCA: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
AT1G20920	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.09	Archaeplastida
AT3G09620	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.04	Archaeplastida
Cre16.g676400	No alias	RNA processing.RNA splicing.spliceosome...	0.02	Archaeplastida
GSVIVT01023849001	No alias	DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana	0.1	Archaeplastida
Gb_03798	No alias	RNA helicase (Prp5)	0.05	Archaeplastida
MA_175476g0010	No alias	RNA helicase (Prp5)	0.03	Archaeplastida
Mp1g06750.1	No alias	RNA helicase (Prp5)	0.1	Archaeplastida
Pp3c6_15830V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Archaeplastida
Zm00001e040204_P001	No alias	RNA helicase (Prp5)	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Neighborhood
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Neighborhood
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	734	843
IPR011545	DEAD/DEAH_box_helicase_dom	526	697

External Links

No external refs found!