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  5. GSVIVT01000380001

GSVIVT01000380001


Description : Calmodulin OS=Solanum lycopersicum


Gene families : OG0000031 (Archaeplastida) Phylogenetic Tree(s): OG0000031_tree ,
OG_05_0000412 (LandPlants) Phylogenetic Tree(s): OG_05_0000412_tree ,
OG_06_0000454 (SeedPlants) Phylogenetic Tree(s): OG_06_0000454_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01000380001
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00127800 evm_27.TU.AmTr_v1... Calmodulin OS=Solanum lycopersicum 0.02 Archaeplastida
AT1G62820 No alias Calcium-binding EF-hand family protein 0.04 Archaeplastida
AT2G41110 ATCAL5, CAM2 calmodulin 2 0.05 Archaeplastida
AT3G56800 CAM3, acam-3 calmodulin 3 0.03 Archaeplastida
Cpa|evm.model.tig00001466.13 No alias No description available 0.02 Archaeplastida
Cre06.g283550 No alias Caltractin OS=Scherffelia dubia 0.03 Archaeplastida
Cre11.g468450 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
Gb_09531 No alias Probable calcium-binding protein CML25 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os01g17190.1 No alias Calmodulin-related protein OS=Petunia hybrida... 0.04 Archaeplastida
LOC_Os05g41210.1 No alias Calmodulin-related protein OS=Petunia hybrida... 0.03 Archaeplastida
MA_10429336g0010 No alias Calmodulin-related protein OS=Petunia hybrida... 0.04 Archaeplastida
MA_10431603g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_15211g0010 No alias Calmodulin-related protein OS=Petunia hybrida... 0.03 Archaeplastida
MA_616616g0010 No alias Probable calcium-binding protein CML25 OS=Arabidopsis... 0.03 Archaeplastida
MA_66144g0010 No alias Calmodulin-related protein OS=Petunia hybrida... 0.03 Archaeplastida
Mp1g00920.1 No alias Calmodulin-related protein OS=Petunia hybrida... 0.04 Archaeplastida
Smo141966 No alias Calmodulin-1 OS=Oryza sativa subsp. indica 0.03 Archaeplastida
Solyc10g074740.2.1 No alias Calcium-binding protein CAST OS=Solanum tuberosum... 0.03 Archaeplastida
Solyc12g099990.2.1 No alias Calmodulin-related protein OS=Petunia hybrida... 0.03 Archaeplastida
Zm00001e017290_P001 No alias Calmodulin-related protein OS=Petunia hybrida... 0.03 Archaeplastida
Zm00001e027331_P001 No alias Calmodulin-related protein OS=Petunia hybrida... 0.04 Archaeplastida
Zm00001e035910_P001 No alias Calmodulin-related protein OS=Petunia hybrida... 0.06 Archaeplastida
Zm00001e039793_P001 No alias Probable calcium-binding protein CML28 OS=Oryza sativa... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006417 regulation of translation IEP Neighborhood
BP GO:0006448 regulation of translational elongation IEP Neighborhood
BP GO:0006449 regulation of translational termination IEP Neighborhood
BP GO:0006452 translational frameshifting IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0034248 regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
MF GO:0043022 ribosome binding IEP Neighborhood
BP GO:0043243 positive regulation of protein complex disassembly IEP Neighborhood
BP GO:0043244 regulation of protein complex disassembly IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0045727 positive regulation of translation IEP Neighborhood
BP GO:0045901 positive regulation of translational elongation IEP Neighborhood
BP GO:0045905 positive regulation of translational termination IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051130 positive regulation of cellular component organization IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051247 positive regulation of protein metabolic process IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 13 73
IPR002048 EF_hand_dom 83 146
No external refs found!