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  5. GSVIVT01001059001

GSVIVT01001059001


Description : Class V chitinase OS=Arabidopsis thaliana


Gene families : OG0000905 (Archaeplastida) Phylogenetic Tree(s): OG0000905_tree ,
OG_05_0000646 (LandPlants) Phylogenetic Tree(s): OG_05_0000646_tree ,
OG_06_0000436 (SeedPlants) Phylogenetic Tree(s): OG_06_0000436_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01001059001
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00150p00033570 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AT4G19720 No alias Glycosyl hydrolase family protein with chitinase insertion domain 0.04 Archaeplastida
AT4G19800 No alias Glycosyl hydrolase family protein with chitinase insertion domain 0.03 Archaeplastida
AT4G19810 No alias Glycosyl hydrolase family protein with chitinase insertion domain 0.07 Archaeplastida
GSVIVT01001068001 No alias Class V chitinase OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_00908 No alias Class V chitinase OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_00909 No alias Class V chitinase OS=Arabidopsis thaliana... 0.07 Archaeplastida
Gb_00910 No alias Class V chitinase OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_04927 No alias Class V chitinase OS=Arabidopsis thaliana... 0.06 Archaeplastida
Gb_04931 No alias no description available(sp|a0a072ur65|cht5b_medtr :... 0.04 Archaeplastida
Gb_10730 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_124661g0010 No alias no description available(sp|a0a072ur65|cht5b_medtr :... 0.02 Archaeplastida
MA_31969g0010 No alias no description available(sp|a0a072ur65|cht5b_medtr :... 0.04 Archaeplastida
MA_4308823g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_83505g0010 No alias Class V chitinase OS=Arabidopsis thaliana... 0.04 Archaeplastida
Smo410071 No alias Class V chitinase OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc07g005090.4.1 No alias no description available(sp|a0a072vep0|cht5a_medtr :... 0.05 Archaeplastida
Solyc07g005100.4.1 No alias Class V chitinase OS=Arabidopsis thaliana... 0.06 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001223 Glyco_hydro18_cat 32 358
No external refs found!