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  5. GSVIVT01001130001

GSVIVT01001130001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL21 component


Gene families : OG0001742 (Archaeplastida) Phylogenetic Tree(s): OG0001742_tree ,
OG_05_0111582 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0089600 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01001130001
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00252940 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
AMTR_s00024p00178920 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
AT1G09590 No alias Translation protein SH3-like family protein 0.28 Archaeplastida
AT1G09690 No alias Translation protein SH3-like family protein 0.31 Archaeplastida
AT1G57660 No alias Translation protein SH3-like family protein 0.14 Archaeplastida
Cpa|evm.model.tig00000640.5 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
Cre06.g278135 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.31 Archaeplastida
Gb_09077 No alias component RPL21 of LSU proteome component 0.16 Archaeplastida
LOC_Os03g04750.1 No alias component RPL21 of LSU proteome component 0.29 Archaeplastida
LOC_Os10g32820.1 No alias component RPL21 of LSU proteome component 0.14 Archaeplastida
MA_186351g0010 No alias component RPL21 of LSU proteome component 0.08 Archaeplastida
MA_40819g0010 No alias component RPL21 of LSU proteome component 0.04 Archaeplastida
Mp6g01390.1 No alias component RPL21 of LSU proteome component 0.31 Archaeplastida
Pp3c12_9320V3.1 No alias Translation protein SH3-like family protein 0.28 Archaeplastida
Pp3c13_2360V3.1 No alias Translation protein SH3-like family protein 0.24 Archaeplastida
Pp3c3_5550V3.1 No alias Translation protein SH3-like family protein 0.26 Archaeplastida
Pp3c4_21520V3.1 No alias Translation protein SH3-like family protein 0.25 Archaeplastida
Smo170832 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
Solyc10g078960.2.1 No alias component RPL21 of LSU proteome component 0.28 Archaeplastida
Solyc10g080590.2.1 No alias component RPL21 of LSU proteome component 0.28 Archaeplastida
Zm00001e000341_P001 No alias component RPL21 of LSU proteome component 0.18 Archaeplastida
Zm00001e004623_P001 No alias component RPL21 of LSU proteome component 0.1 Archaeplastida
Zm00001e012727_P001 No alias component RPL21 of LSU proteome component 0.18 Archaeplastida
Zm00001e038963_P001 No alias component RPL21 of LSU proteome component 0.19 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000930 gamma-tubulin complex IEP Neighborhood
CC GO:0000931 gamma-tubulin large complex IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
CC GO:0008274 gamma-tubulin ring complex IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0031390 Ctf18 RFC-like complex IEP Neighborhood
BP GO:0031503 protein-containing complex localization IEP Neighborhood
BP GO:0033566 gamma-tubulin complex localization IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034629 cellular protein-containing complex localization IEP Neighborhood
CC GO:0044450 microtubule organizing center part IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR001147 Ribosomal_L21e 1 50
No external refs found!