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  5. AMTR_s00033p00241280

AMTR_s00033p00241280 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00033.259

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor


Gene families : OG0001192 (Archaeplastida) Phylogenetic Tree(s): OG0001192_tree ,
OG_05_0000884 (LandPlants) Phylogenetic Tree(s): OG_05_0000884_tree ,
OG_06_0000674 (SeedPlants) Phylogenetic Tree(s): OG_06_0000674_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00033p00241280
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT1G25550 No alias myb-like transcription factor family protein 0.07 Archaeplastida
LOC_Os02g22020.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Mp4g15170.1 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Zm00001e003080_P001 No alias G2-like GARP transcription factor 0.05 Archaeplastida
Zm00001e011555_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 238 289
No external refs found!