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  5. GSVIVT01002055001

GSVIVT01002055001


Description : Nucleotide metabolism.deoxynucleotide metabolism.thymidine kinase


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0004751 (LandPlants) Phylogenetic Tree(s): OG_05_0004751_tree ,
OG_06_0003052 (SeedPlants) Phylogenetic Tree(s): OG_06_0003052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01002055001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00181560 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 Archaeplastida
AMTR_s00009p00268260 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
AMTR_s00010p00113430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g18485... 0.01 Archaeplastida
AMTR_s00011p00195950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22150,... 0.02 Archaeplastida
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.02 Archaeplastida
AMTR_s00051p00085060 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g16610... 0.02 Archaeplastida
AMTR_s00057p00137550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g36980,... 0.04 Archaeplastida
AMTR_s00057p00151990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
AMTR_s00068p00031610 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00069p00058270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.03 Archaeplastida
AMTR_s00077p00166950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14730... 0.03 Archaeplastida
AMTR_s00078p00125150 No alias Pentatricopeptide repeat-containing protein At2g02750... 0.02 Archaeplastida
AMTR_s00081p00019740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g27110... 0.03 Archaeplastida
AMTR_s00084p00089150 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
AMTR_s00103p00113040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65570... 0.02 Archaeplastida
AT1G74600 No alias pentatricopeptide (PPR) repeat-containing protein 0.01 Archaeplastida
AT2G39620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT3G47530 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT5G13270 RARE1 Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 Archaeplastida
Gb_33328 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_37510 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
LOC_Os03g56400.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
LOC_Os06g15670.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g33700.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.02 Archaeplastida
Mp8g01790.1 No alias ssDNA-binding protein (OSB) 0.02 Archaeplastida
Pp3c5_15090V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
Smo94945 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Smo96927 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.01 Archaeplastida
Solyc02g087610.1.1 No alias Pentatricopeptide repeat-containing protein At3g28660... 0.03 Archaeplastida
Solyc03g063160.1.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Solyc06g053850.4.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Zm00001e015799_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e019452_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004797 thymidine kinase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR001267 Thymidine_kinase 21 44
IPR001267 Thymidine_kinase 490 640
IPR002885 Pentatricopeptide_repeat 332 351
IPR002885 Pentatricopeptide_repeat 156 203
IPR002885 Pentatricopeptide_repeat 257 304
No external refs found!