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  5. GSVIVT01002790001

GSVIVT01002790001


Description : Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3d component


Gene families : OG0004060 (Archaeplastida) Phylogenetic Tree(s): OG0004060_tree ,
OG_05_0004437 (LandPlants) Phylogenetic Tree(s): OG_05_0004437_tree ,
OG_06_0005004 (SeedPlants) Phylogenetic Tree(s): OG_06_0005004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01002790001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00206060 evm_27.TU.AmTr_v1... Protein biosynthesis.translation... 0.04 Archaeplastida
AT4G20980 No alias Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 0.02 Archaeplastida
AT5G44320 No alias Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 0.06 Archaeplastida
Cpa|evm.model.tig00000142.3 No alias Protein biosynthesis.translation... 0.03 Archaeplastida
Cre05.g242300 No alias Protein biosynthesis.translation... 0.04 Archaeplastida
Gb_09895 No alias component eIF3d of eIF3 mRNA-to-PIC binding complex 0.03 Archaeplastida
LOC_Os05g49150.1 No alias component eIF3d of eIF3 mRNA-to-PIC binding complex 0.02 Archaeplastida
MA_63764g0010 No alias component eIF3d of eIF3 mRNA-to-PIC binding complex 0.06 Archaeplastida
Mp4g09070.1 No alias component eIF3d of eIF3 mRNA-to-PIC binding complex 0.04 Archaeplastida
Pp3c13_8400V3.1 No alias Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 0.04 Archaeplastida
Pp3c3_3440V3.1 No alias Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 0.03 Archaeplastida
Solyc02g078120.2.1 No alias component eIF3d of eIF3 mRNA-to-PIC binding complex 0.06 Archaeplastida
Zm00001e032448_P001 No alias component eIF3d of eIF3 mRNA-to-PIC binding complex 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0004004 ATP-dependent RNA helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008186 RNA-dependent ATPase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007783 eIF3d 57 130
IPR007783 eIF3d 17 54
No external refs found!