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  5. GSVIVT01003696001

GSVIVT01003696001


Description : Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component


Gene families : OG0000861 (Archaeplastida) Phylogenetic Tree(s): OG0000861_tree ,
OG_05_0005703 (LandPlants) Phylogenetic Tree(s): OG_05_0005703_tree ,
OG_06_0007589 (SeedPlants) Phylogenetic Tree(s): OG_06_0007589_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01003696001
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020952.49 No alias Protein degradation.peptidase families.serine-type... 0.02 Archaeplastida
Cre03.g204350 No alias Protein degradation.peptidase families.serine-type... 0.02 Archaeplastida
Cre07.g331500 No alias Protein degradation.peptidase families.serine-type... 0.05 Archaeplastida
Cre14.g619100 No alias Protein degradation.peptidase families.serine-type... 0.05 Archaeplastida
Gb_12676 No alias non-proteolytic core component ClpR of chloroplast... 0.04 Archaeplastida
Gb_40312 No alias non-proteolytic core component ClpR of chloroplast... 0.07 Archaeplastida
LOC_Os03g22430.1 No alias non-proteolytic core component ClpR of chloroplast... 0.07 Archaeplastida
MA_10429819g0020 No alias non-proteolytic core component ClpR of chloroplast... 0.03 Archaeplastida
Mp6g21300.1 No alias non-proteolytic core component ClpR of chloroplast... 0.06 Archaeplastida
Mp7g03170.1 No alias non-proteolytic core component ClpR of chloroplast... 0.06 Archaeplastida
Pp3c13_21640V3.1 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.03 Archaeplastida
Pp3c26_8310V3.1 No alias CLP protease R subunit 4 0.03 Archaeplastida
Pp3c2_27590V3.1 No alias CLP protease R subunit 4 0.02 Archaeplastida
Smo65351 No alias Protein degradation.peptidase families.serine-type... 0.03 Archaeplastida
Solyc08g077890.3.1 No alias non-proteolytic core component ClpR of chloroplast... 0.03 Archaeplastida
Solyc10g049710.2.1 No alias non-proteolytic core component ClpR of chloroplast... 0.03 Archaeplastida
Zm00001e001632_P001 No alias no hits & (original description: none) 0.14 Archaeplastida
Zm00001e017288_P001 No alias non-proteolytic core component ClpR of chloroplast... 0.13 Archaeplastida
Zm00001e032571_P001 No alias non-proteolytic core component ClpR of chloroplast... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0004807 triose-phosphate isomerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006787 porphyrin-containing compound catabolic process IEP Neighborhood
BP GO:0006788 heme oxidation IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015996 chlorophyll catabolic process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016860 intramolecular oxidoreductase activity IEP Neighborhood
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033015 tetrapyrrole catabolic process IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046149 pigment catabolic process IEP Neighborhood
MF GO:0047746 chlorophyllase activity IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0051920 peroxiredoxin activity IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 84 262
No external refs found!