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  5. GSVIVT01004809001

GSVIVT01004809001


Description : Chromatin organisation.histone modifications.histone deacetylation.SHL1 histone deacetylation complex recruiting protein


Gene families : OG0000832 (Archaeplastida) Phylogenetic Tree(s): OG0000832_tree ,
OG_05_0001161 (LandPlants) Phylogenetic Tree(s): OG_05_0001161_tree ,
OG_06_0001820 (SeedPlants) Phylogenetic Tree(s): OG_06_0001820_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01004809001
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AT4G22140 EBS PHD finger family protein / bromo-adjacent homology... 0.03 Archaeplastida
LOC_Os08g32620.1 No alias component BAH of BAH-EMF1 Polycomb silencing complex 0.02 Archaeplastida
MA_14897g0020 No alias component BAH of BAH-EMF1 Polycomb silencing complex 0.02 Archaeplastida
Zm00001e009779_P001 No alias component BAH of BAH-EMF1 Polycomb silencing complex 0.04 Archaeplastida
Zm00001e022395_P003 No alias component BAH of BAH-EMF1 Polycomb silencing complex 0.02 Archaeplastida
Zm00001e034034_P004 No alias component BAH of BAH-EMF1 Polycomb silencing complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 140 187
IPR001025 BAH_dom 23 135
No external refs found!