1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00036p00166880

AMTR_s00036p00166880 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00036.82

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor


Gene families : OG0000770 (Archaeplastida) Phylogenetic Tree(s): OG0000770_tree ,
OG_05_0000934 (LandPlants) Phylogenetic Tree(s): OG_05_0000934_tree ,
OG_06_0000799 (SeedPlants) Phylogenetic Tree(s): OG_06_0000799_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00036p00166880
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AT1G17520 No alias Homeodomain-like/winged-helix DNA-binding family protein 0.03 Archaeplastida
GSVIVT01015170001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Zm00001e020011_P001 No alias transcription factor (MYB-related) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003682 chromatin binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006897 endocytosis IEP Neighborhood
MF GO:0009916 alternative oxidase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0030259 lipid glycosylation IEP Neighborhood
BP GO:0042255 ribosome assembly IEP Neighborhood
BP GO:0042256 mature ribosome assembly IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
MF GO:0043022 ribosome binding IEP Neighborhood
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0098657 import into cell IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 5 55
IPR005818 Histone_H1/H5_H15 117 180
No external refs found!