GSVIVT01007883001


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.VIP4/LEO1 component


Gene families : OG0004830 (Archaeplastida) Phylogenetic Tree(s): OG0004830_tree ,
OG_05_0004817 (LandPlants) Phylogenetic Tree(s): OG_05_0004817_tree ,
OG_06_0007288 (SeedPlants) Phylogenetic Tree(s): OG_06_0007288_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01007883001
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT5G61150 VIP4 leo1-like family protein 0.06 Archaeplastida
LOC_Os07g01880.1 No alias component VIP4/LEO1 of PAF1C transcription initiation... 0.03 Archaeplastida
Mp1g21810.1 No alias component VIP4/LEO1 of PAF1C transcription initiation... 0.03 Archaeplastida
Zm00001e011566_P001 No alias component VIP4/LEO1 of PAF1C transcription initiation... 0.03 Archaeplastida
Zm00001e032701_P001 No alias component VIP4/LEO1 of PAF1C transcription initiation... 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEA Interproscan
BP GO:0016570 histone modification IEA Interproscan
CC GO:0016593 Cdc73/Paf1 complex IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008318 protein prenyltransferase activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018342 protein prenylation IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0097354 prenylation IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
InterPro domains Description Start Stop
IPR007149 Leo1 260 419
No external refs found!