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  5. GSVIVT01007972001

GSVIVT01007972001


Description : Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000789 (LandPlants) Phylogenetic Tree(s): OG_05_0000789_tree ,
OG_06_0000692 (SeedPlants) Phylogenetic Tree(s): OG_06_0000692_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01007972001

Target Alias Description ECC score Gene Family Method Actions
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
LOC_Os03g60690.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_10432670g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_185098g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
Solyc01g095160.3.1 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016829 lyase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 234 283
IPR002885 Pentatricopeptide_repeat 128 175
IPR002885 Pentatricopeptide_repeat 1 42
IPR002885 Pentatricopeptide_repeat 208 233
IPR002885 Pentatricopeptide_repeat 311 336
IPR002885 Pentatricopeptide_repeat 97 126
No external refs found!