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Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).NHP2L1/SNU13 snRNP component
Gene families : OG0001139 (Archaeplastida) Phylogenetic Tree(s): OG0001139_tree ,
OG_05_0004607 (LandPlants) Phylogenetic Tree(s): OG_05_0004607_tree ,
OG_06_0004849 (SeedPlants) Phylogenetic Tree(s): OG_06_0004849_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01008187001 | |
| Cluster | HCCA: Cluster_60 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00043p00189790 | evm_27.TU.AmTr_v1... | RNA processing.RNA modification.rRNA/tRNA... | 0.06 | Archaeplastida | |
| AT4G12600 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.16 | Archaeplastida | |
| AT4G22380 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.03 | Archaeplastida | |
| AT5G08180 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.25 | Archaeplastida | |
| AT5G20160 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.24 | Archaeplastida | |
| Cpa|evm.model.tig00000600.11 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.04 | Archaeplastida | |
| Cre06.g249250 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.13 | Archaeplastida | |
| Gb_26398 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.05 | Archaeplastida | |
| LOC_Os03g13800.1 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.12 | Archaeplastida | |
| LOC_Os06g16290.1 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.12 | Archaeplastida | |
| LOC_Os10g03540.1 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.05 | Archaeplastida | |
| MA_10201g0010 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.02 | Archaeplastida | |
| MA_141850g0010 | No alias | No annotation | 0.04 | Archaeplastida | |
| MA_16906g0010 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.1 | Archaeplastida | |
| MA_433779g0010 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.13 | Archaeplastida | |
| MA_670271g0010 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.06 | Archaeplastida | |
| MA_99460g0010 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.08 | Archaeplastida | |
| Mp7g12360.1 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.03 | Archaeplastida | |
| Mp8g07360.1 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.04 | Archaeplastida | |
| Pp3c14_21860V3.1 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.03 | Archaeplastida | |
| Pp3c15_25080V3.1 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.02 | Archaeplastida | |
| Pp3c17_18050V3.1 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.11 | Archaeplastida | |
| Pp3c9_25980V3.1 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.06 | Archaeplastida | |
| Smo98161 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.08 | Archaeplastida | |
| Solyc09g011420.3.1 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.02 | Archaeplastida | |
| Solyc12g038980.2.1 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.15 | Archaeplastida | |
| Zm00001e001004_P001 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.08 | Archaeplastida | |
| Zm00001e023454_P001 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.03 | Archaeplastida | |
| Zm00001e038611_P002 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.17 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005622 | intracellular | IEP | Neighborhood |
| CC | GO:0005730 | nucleolus | IEP | Neighborhood |
| CC | GO:0005840 | ribosome | IEP | Neighborhood |
| BP | GO:0006334 | nucleosome assembly | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| MF | GO:0008097 | 5S rRNA binding | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
| MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0034728 | nucleosome organization | IEP | Neighborhood |
| BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
| BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004038 | Ribosomal_L7Ae/L30e/S12e/Gad45 | 40 | 123 |
| No external refs found! |