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  5. GSVIVT01008352001

GSVIVT01008352001


Description : RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase


Gene families : OG0001358 (Archaeplastida) Phylogenetic Tree(s): OG0001358_tree ,
OG_05_0001486 (LandPlants) Phylogenetic Tree(s): OG_05_0001486_tree ,
OG_06_0001201 (SeedPlants) Phylogenetic Tree(s): OG_06_0001201_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008352001
Cluster HCCA: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
AT4G32850 PAP(IV), nPAP nuclear poly(a) polymerase 0.05 Archaeplastida
Cpa|evm.model.tig00000037.23 No alias RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.02 Archaeplastida
Cre10.g433750 No alias RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.02 Archaeplastida
Gb_12958 No alias poly(A) RNA polymerase 0.02 Archaeplastida
LOC_Os02g13400.2 No alias poly(A) RNA polymerase 0.03 Archaeplastida
LOC_Os06g21470.1 No alias poly(A) RNA polymerase 0.02 Archaeplastida
MA_136671g0010 No alias poly(A) RNA polymerase 0.03 Archaeplastida
Mp7g10140.1 No alias poly(A) RNA polymerase 0.07 Archaeplastida
Pp3c18_13990V3.1 No alias poly(A) polymerase 1 0.04 Archaeplastida
Smo231918 No alias RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.03 Archaeplastida
Solyc08g066200.3.1 No alias poly(A) RNA polymerase 0.04 Archaeplastida
Solyc12g095890.2.1 No alias poly(A) RNA polymerase 0.03 Archaeplastida
Zm00001e005199_P002 No alias poly(A) RNA polymerase 0.03 Archaeplastida
Zm00001e012328_P001 No alias poly(A) RNA polymerase 0.04 Archaeplastida
Zm00001e024922_P001 No alias poly(A) RNA polymerase 0.08 Archaeplastida
Zm00001e030659_P006 No alias poly(A) RNA polymerase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0043631 RNA polyadenylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005244 voltage-gated ion channel activity IEP Neighborhood
MF GO:0005247 voltage-gated chloride channel activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
MF GO:0005254 chloride channel activity IEP Neighborhood
BP GO:0006821 chloride transport IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
MF GO:0015108 chloride transmembrane transporter activity IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0022832 voltage-gated channel activity IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002934 Polymerase_NTP_transf_dom 82 166
IPR007012 PolA_pol_cen_dom 17 360
IPR007010 PolA_pol_RNA-bd_dom 364 422
No external refs found!