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  5. GSVIVT01008395001

GSVIVT01008395001


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RACK1 associated component


Gene families : OG0002844 (Archaeplastida) Phylogenetic Tree(s): OG0002844_tree ,
OG_05_0006168 (LandPlants) Phylogenetic Tree(s): OG_05_0006168_tree ,
OG_06_0005818 (SeedPlants) Phylogenetic Tree(s): OG_06_0005818_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008395001
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00058690 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
AT1G18080 ATARCA, RACK1A, RACK1A_AT Transducin/WD40 repeat-like superfamily protein 0.1 Archaeplastida
AT1G48630 RACK1B_AT receptor for activated C kinase 1B 0.12 Archaeplastida
AT3G18130 RACK1C_AT receptor for activated C kinase 1C 0.14 Archaeplastida
Cpa|evm.model.tig00000169.6 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
Cre06.g278222 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
Gb_33900 No alias associated component RACK1 of SSU proteome 0.03 Archaeplastida
LOC_Os01g49290.1 No alias associated component RACK1 of SSU proteome 0.14 Archaeplastida
LOC_Os05g47890.1 No alias associated component RACK1 of SSU proteome 0.1 Archaeplastida
MA_10434872g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10435947g0010 No alias Guanine nucleotide-binding protein subunit beta-like... 0.09 Archaeplastida
Mp3g15630.1 No alias associated component RACK1 of SSU proteome 0.15 Archaeplastida
Pp3c16_13180V3.1 No alias receptor for activated C kinase 1B 0.05 Archaeplastida
Pp3c27_6040V3.1 No alias receptor for activated C kinase 1B 0.12 Archaeplastida
Pp3c5_770V3.1 No alias receptor for activated C kinase 1B 0.1 Archaeplastida
Smo266532 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
Solyc03g119040.3.1 No alias associated component RACK1 of SSU proteome 0.17 Archaeplastida
Solyc06g069010.3.1 No alias associated component RACK1 of SSU proteome 0.17 Archaeplastida
Zm00001e026456_P001 No alias associated component RACK1 of SSU proteome 0.23 Archaeplastida
Zm00001e032340_P001 No alias associated component RACK1 of SSU proteome 0.22 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 1110 1146
IPR001680 WD40_repeat 1154 1188
IPR001680 WD40_repeat 1290 1313
IPR001680 WD40_repeat 1194 1231
IPR001680 WD40_repeat 1064 1098
IPR001005 SANT/Myb 455 500
IPR001005 SANT/Myb 561 604
IPR001005 SANT/Myb 509 552
No external refs found!