GSVIVT01008424001

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.WOX transcription factor

Gene families : OG0000425 (Archaeplastida) Phylogenetic Tree(s): OG0000425_tree ,
OG_05_0000212 (LandPlants) Phylogenetic Tree(s): OG_05_0000212_tree ,
OG_06_0017018 (SeedPlants) Phylogenetic Tree(s): OG_06_0017018_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01008424001
Cluster	HCCA: Cluster_159

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00149750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
AMTR_s00051p00020930	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.05	Archaeplastida
AT2G01500	PFS2, HOS9, WOX6	Homeodomain-like superfamily protein	0.04	Archaeplastida
AT2G17950	WUS, PGA6, WUS1	Homeodomain-like superfamily protein	0.03	Archaeplastida
AT2G28610	WOX3, PRS1, PRS	Homeodomain-like superfamily protein	0.06	Archaeplastida
AT2G33880	STIP, HB-3, WOX9	homeobox-3	0.04	Archaeplastida
AT3G11260	WOX5	WUSCHEL related homeobox 5	0.03	Archaeplastida
AT5G05770	WOX7	WUSCHEL related homeobox 7	0.04	Archaeplastida
AT5G17810	WOX12	WUSCHEL related homeobox 12	0.03	Archaeplastida
AT5G46010	No alias	Homeodomain-like superfamily protein	0.05	Archaeplastida
GSVIVT01009453001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.07	Archaeplastida
GSVIVT01011738001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.07	Archaeplastida
GSVIVT01021144001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01029942001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.06	Archaeplastida
Gb_05339	No alias	transcription factor (WOX)	0.02	Archaeplastida
Gb_36701	No alias	transcription factor (WOX)	0.03	Archaeplastida
LOC_Os05g02730.1	No alias	transcription factor (WOX)	0.04	Archaeplastida
LOC_Os05g48990.1	No alias	transcription factor (WOX)	0.04	Archaeplastida
LOC_Os07g48560.1	No alias	transcription factor (WOX)	0.07	Archaeplastida
MA_10234279g0010	No alias	transcription factor (WOX)	0.02	Archaeplastida
MA_10344604g0010	No alias	transcription factor (WOX)	0.03	Archaeplastida
MA_747816g0010	No alias	transcription factor (WOX)	0.02	Archaeplastida
MA_8832398g0010	No alias	transcription factor (WOX)	0.03	Archaeplastida
MA_8850184g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc02g077390.2.1	No alias	transcription factor (WOX)	0.03	Archaeplastida
Solyc02g083950.3.1	No alias	transcription factor (WOX)	0.03	Archaeplastida
Solyc03g118770.4.1	No alias	transcription factor (WOX)	0.05	Archaeplastida
Solyc04g078650.4.1	No alias	transcription factor (WOX)	0.06	Archaeplastida
Zm00001e001527_P001	No alias	transcription factor (WOX)	0.02	Archaeplastida
Zm00001e006644_P002	No alias	transcription factor (WOX)	0.04	Archaeplastida
Zm00001e009121_P001	No alias	transcription factor (WOX)	0.05	Archaeplastida
Zm00001e024169_P001	No alias	transcription factor (WOX)	0.05	Archaeplastida
Zm00001e028720_P001	No alias	transcription factor (WOX)	0.03	Archaeplastida
Zm00001e029534_P001	No alias	transcription factor (WOX)	0.04	Archaeplastida
Zm00001e032433_P003	No alias	transcription factor (WOX)	0.06	Archaeplastida
Zm00001e038272_P001	No alias	transcription factor (WOX)	0.03	Archaeplastida
Zm00001e041785_P001	No alias	transcription factor (WOX)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
BP	GO:0008150	biological_process	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008175	tRNA methyltransferase activity	IEP	Neighborhood
BP	GO:0008272	sulfate transport	IEP	Neighborhood
MF	GO:0008509	anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015116	sulfate transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
MF	GO:0016426	tRNA (adenine) methyltransferase activity	IEP	Neighborhood
MF	GO:0016429	tRNA (adenine-N1-)-methyltransferase activity	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0030488	tRNA methylation	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
CC	GO:0034708	methyltransferase complex	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
CC	GO:0043527	tRNA methyltransferase complex	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0072348	sulfur compound transport	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	77	136

External Links

No external refs found!

GSVIVT01008424001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation