GSVIVT01008708001


Description : Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT2 beta subunit


Gene families : OG0005394 (Archaeplastida) Phylogenetic Tree(s): OG0005394_tree ,
OG_05_0006074 (LandPlants) Phylogenetic Tree(s): OG_05_0006074_tree ,
OG_06_0006574 (SeedPlants) Phylogenetic Tree(s): OG_06_0006574_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008708001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00149p00026500 evm_27.TU.AmTr_v1... Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.05 Archaeplastida
AT5G20890 No alias TCP-1/cpn60 chaperonin family protein 0.08 Archaeplastida
Cpa|evm.model.tig00020903.30 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.03 Archaeplastida
Cre09.g416750 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.03 Archaeplastida
LOC_Os03g42220.1 No alias CCT2 subunit beta of CCT chaperonin folding complex 0.11 Archaeplastida
LOC_Os05g48290.3 No alias CCT2 subunit beta of CCT chaperonin folding complex 0.03 Archaeplastida
MA_10434959g0010 No alias CCT2 subunit beta of CCT chaperonin folding complex 0.1 Archaeplastida
Pp3c6_15940V3.1 No alias TCP-1/cpn60 chaperonin family protein 0.07 Archaeplastida
Solyc11g069000.2.1 No alias CCT2 subunit beta of CCT chaperonin folding complex 0.06 Archaeplastida
Zm00001e017228_P001 No alias CCT2 subunit beta of CCT chaperonin folding complex 0.13 Archaeplastida
Zm00001e025595_P002 No alias CCT2 subunit beta of CCT chaperonin folding complex 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR002423 Cpn60/TCP-1 30 517
No external refs found!