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  5. GSVIVT01008808001

GSVIVT01008808001


Description : Ubinuclein-1 OS=Arabidopsis thaliana


Gene families : OG0002758 (Archaeplastida) Phylogenetic Tree(s): OG0002758_tree ,
OG_05_0002488 (LandPlants) Phylogenetic Tree(s): OG_05_0002488_tree ,
OG_06_0003863 (SeedPlants) Phylogenetic Tree(s): OG_06_0003863_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008808001
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g66050.1 No alias Ubinuclein-1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c13_4490V3.1 No alias wound-responsive family protein 0.02 Archaeplastida
Pp3c3_8000V3.1 No alias wound-responsive family protein 0.03 Archaeplastida
Smo440877 No alias Ubinuclein-2 OS=Arabidopsis thaliana 0.04 Archaeplastida
Solyc11g005130.2.1 No alias Ubinuclein-1 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Zm00001e019054_P001 No alias Ubinuclein-1 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR014840 HRD 127 175
No external refs found!