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  5. GSVIVT01009001001

GSVIVT01009001001


Description : Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana


Gene families : OG0000652 (Archaeplastida) Phylogenetic Tree(s): OG0000652_tree ,
OG_05_0003199 (LandPlants) Phylogenetic Tree(s): OG_05_0003199_tree ,
OG_06_0003672 (SeedPlants) Phylogenetic Tree(s): OG_06_0003672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009001001
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00239150 evm_27.TU.AmTr_v1... Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00119p00113390 evm_27.TU.AmTr_v1... Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT1G16800 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
AT4G30100 No alias P-loop containing nucleoside triphosphate hydrolases... 0.07 Archaeplastida
GSVIVT01029557001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
Gb_01813 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_33974 No alias helicase (SEN1) 0.03 Archaeplastida
LOC_Os09g32190.1 No alias no hits & (original description: none) 0.01 Archaeplastida
LOC_Os10g02930.1 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_13389g0020 No alias helicase (SEN1) 0.06 Archaeplastida
MA_208026g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_88596g0010 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.1 Archaeplastida
Mp7g11100.1 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c10_25870V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
Pp3c19_7860V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 Archaeplastida
Solyc04g072830.4.1 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.11 Archaeplastida
Solyc04g072840.3.1 No alias no hits & (original description: none) 0.09 Archaeplastida
Zm00001e002590_P001 No alias no hits & (original description: none) 0.1 Archaeplastida
Zm00001e012950_P003 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Zm00001e034571_P001 No alias helicase (SEN1) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!