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  5. GSVIVT01009020001

GSVIVT01009020001


Description : Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000964 (Archaeplastida) Phylogenetic Tree(s): OG0000964_tree ,
OG_05_0000819 (LandPlants) Phylogenetic Tree(s): OG_05_0000819_tree ,
OG_06_0001861 (SeedPlants) Phylogenetic Tree(s): OG_06_0001861_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009020001
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00065720 evm_27.TU.AmTr_v1... Pumilio homolog 12 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01038732001 No alias Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os12g30520.1 No alias Pumilio homolog 12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc01g028800.3.1 No alias Pumilio homolog 12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc04g073980.3.1 No alias Putative pumilio homolog 7, chloroplastic OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e000685_P001 No alias Putative pumilio homolog 7, chloroplastic OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e024450_P001 No alias Pumilio homolog 12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e039541_P001 No alias Pumilio homolog 12 OS=Arabidopsis thaliana... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 107 130
IPR001313 Pumilio_RNA-bd_rpt 69 101
IPR001313 Pumilio_RNA-bd_rpt 216 239
IPR001313 Pumilio_RNA-bd_rpt 3 26
IPR001313 Pumilio_RNA-bd_rpt 147 164
No external refs found!