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  5. GSVIVT01009227001

GSVIVT01009227001


Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000064 (SeedPlants) Phylogenetic Tree(s): OG_06_0000064_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009227001
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.06 Archaeplastida
AMTR_s00004p00076010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
AMTR_s00006p00257020 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.05 Archaeplastida
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.05 Archaeplastida
AMTR_s00014p00068600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g43980,... 0.02 Archaeplastida
AMTR_s00022p00127120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
AMTR_s00024p00225420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
AMTR_s00031p00067070 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
AMTR_s00032p00219990 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
AMTR_s00046p00214930 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
AMTR_s00051p00085060 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g16610... 0.02 Archaeplastida
AMTR_s00056p00185560 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00062p00213230 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
AMTR_s00068p00072270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
AMTR_s00098p00155650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39350... 0.03 Archaeplastida
AMTR_s00122p00115170 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.09 Archaeplastida
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.17 Archaeplastida
AT3G23330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G29230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.16 Archaeplastida
GSVIVT01003804001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida
GSVIVT01014727001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
GSVIVT01031733001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
GSVIVT01036975001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.04 Archaeplastida
Gb_11220 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_11688 No alias OTP70 plastidial RNA splicing factor 0.04 Archaeplastida
Gb_14172 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_14324 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_14867 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_17076 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_17294 No alias RNA editing factor (MEF3) 0.02 Archaeplastida
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
Gb_21745 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_21949 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_22477 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Gb_23678 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_25129 No alias RNA editing factor (ECD1) 0.04 Archaeplastida
Gb_26526 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 Archaeplastida
Gb_29872 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_39402 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_41341 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
LOC_Os01g10800.1 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.11 Archaeplastida
LOC_Os02g50280.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.19 Archaeplastida
LOC_Os03g04390.1 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.06 Archaeplastida
LOC_Os03g58100.1 No alias RNA editing factor (OTP85) 0.04 Archaeplastida
LOC_Os03g59264.1 No alias lectin chaperone (CRT) 0.09 Archaeplastida
LOC_Os04g02850.1 No alias RNA editing factor (OTP84) 0.04 Archaeplastida
LOC_Os04g39410.1 No alias RNA editing factor (OTP86) 0.1 Archaeplastida
LOC_Os04g51350.1 No alias RNA editing factor (AEF1) 0.05 Archaeplastida
LOC_Os05g12130.1 No alias RNA editing factor (ECD1) 0.04 Archaeplastida
LOC_Os05g49920.1 No alias RNA editing factor (ECB2/VAC1) 0.05 Archaeplastida
LOC_Os05g50950.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.07 Archaeplastida
LOC_Os07g02280.1 No alias RNA editing factor (OTP80) 0.05 Archaeplastida
LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
LOC_Os07g09370.1 No alias RNA editing factor (CRR28) 0.04 Archaeplastida
LOC_Os10g34720.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os11g10740.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
LOC_Os11g29230.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
LOC_Os12g01850.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_10431227g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_123466g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_4438g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_525914g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_615077g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_653417g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_72886g0010 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.04 Archaeplastida
MA_7550g0010 No alias Pentatricopeptide repeat-containing protein At4g25270,... 0.03 Archaeplastida
MA_81514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.08 Archaeplastida
MA_8893194g0010 No alias RNA editing factor (MEF1) 0.02 Archaeplastida
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_9526611g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Pp3c22_1710V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
Pp3c24_8560V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Smo104851 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.05 Archaeplastida
Smo106861 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Smo34426 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.03 Archaeplastida
Smo399 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
Smo465 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo56766 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 Archaeplastida
Smo84657 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
Smo85078 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo90123 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.02 Archaeplastida
Smo95815 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.06 Archaeplastida
Smo98955 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Solyc01g007850.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Solyc01g081020.1.1 No alias RNA editing factor (OTP80) 0.06 Archaeplastida
Solyc01g081110.4.1 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
Solyc01g098150.3.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.1 Archaeplastida
Solyc02g081900.4.1 No alias RNA editing factor (OTP84) 0.05 Archaeplastida
Solyc02g088470.1.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.04 Archaeplastida
Solyc04g076800.3.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.09 Archaeplastida
Solyc05g006800.2.1 No alias Pentatricopeptide repeat-containing protein At1g59720,... 0.03 Archaeplastida
Solyc05g013200.1.1 No alias RNA editing factor (OTP85) 0.04 Archaeplastida
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.05 Archaeplastida
Solyc11g017370.3.1 No alias RNA editing factor (AEF1) 0.08 Archaeplastida
Solyc11g066920.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Solyc12g006575.1.1 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.05 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Zm00001e002552_P001 No alias RNA editing factor (SEL1/PDM1) 0.04 Archaeplastida
Zm00001e003605_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
Zm00001e004121_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e005067_P001 No alias Pentatricopeptide repeat-containing protein At2g42920,... 0.04 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e007042_P001 No alias RNA editing factor (AEF1) 0.14 Archaeplastida
Zm00001e011417_P001 No alias RNA editing factor (CRR28) 0.06 Archaeplastida
Zm00001e011467_P004 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.08 Archaeplastida
Zm00001e013713_P001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.04 Archaeplastida
Zm00001e020567_P001 No alias RNA editing factor (MEF7) 0.04 Archaeplastida
Zm00001e021457_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.14 Archaeplastida
Zm00001e023498_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.14 Archaeplastida
Zm00001e027978_P001 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Zm00001e029186_P001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.18 Archaeplastida
Zm00001e030553_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e030704_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.06 Archaeplastida
Zm00001e031660_P001 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.04 Archaeplastida
Zm00001e032499_P001 No alias no hits & (original description: none) 0.09 Archaeplastida
Zm00001e034445_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
Zm00001e035419_P001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.02 Archaeplastida
Zm00001e035616_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e036301_P001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 Archaeplastida
Zm00001e040920_P001 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006553 lysine metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006788 heme oxidation IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009085 lysine biosynthetic process IEP Neighborhood
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
BP GO:0046451 diaminopimelate metabolic process IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 96 140
IPR032867 DYW_dom 543 669
IPR033443 PPR_long 327 469
IPR002885 Pentatricopeptide_repeat 200 228
IPR002885 Pentatricopeptide_repeat 273 296
IPR002885 Pentatricopeptide_repeat 509 537
No external refs found!