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  5. GSVIVT01009302001

GSVIVT01009302001


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40A pre-mRNA-processing protein


Gene families : OG0002768 (Archaeplastida) Phylogenetic Tree(s): OG0002768_tree ,
OG_05_0003591 (LandPlants) Phylogenetic Tree(s): OG_05_0003591_tree ,
OG_06_0004226 (SeedPlants) Phylogenetic Tree(s): OG_06_0004226_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009302001
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AT1G44910 ATPRP40A, PRP40A pre-mRNA-processing protein 40A 0.06 Archaeplastida
AT3G19670 ATPRP40B, PRP40B pre-mRNA-processing protein 40B 0.07 Archaeplastida
Cre07.g351000 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Gb_14217 No alias pre-mRNA-processing protein (PRP40A/B) 0.02 Archaeplastida
LOC_Os01g34780.1 No alias pre-mRNA-processing protein (PRP40A/B) 0.06 Archaeplastida
MA_10433850g0010 No alias pre-mRNA-processing protein (PRP40A/B) 0.1 Archaeplastida
Mp2g00410.1 No alias pre-mRNA-processing protein (PRP40A/B) 0.05 Archaeplastida
Solyc07g022760.4.1 No alias pre-mRNA-processing protein (PRP40A/B) 0.07 Archaeplastida
Zm00001e020775_P002 No alias pre-mRNA-processing protein (PRP40A/B) 0.06 Archaeplastida
Zm00001e020778_P001 No alias pre-mRNA-processing protein (PRP40A/B) 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006382 adenosine to inosine editing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001202 WW_dom 221 248
IPR001202 WW_dom 264 289
IPR002713 FF_domain 472 521
IPR002713 FF_domain 681 736
IPR002713 FF_domain 817 864
IPR002713 FF_domain 539 589
IPR002713 FF_domain 608 656
No external refs found!