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  5. GSVIVT01009791001

GSVIVT01009791001


Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000133 (Archaeplastida) Phylogenetic Tree(s): OG0000133_tree ,
OG_05_0000245 (LandPlants) Phylogenetic Tree(s): OG_05_0000245_tree ,
OG_06_0001808 (SeedPlants) Phylogenetic Tree(s): OG_06_0001808_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009791001
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00246870 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
AMTR_s00054p00149030 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 Archaeplastida
AMTR_s00136p00108810 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 Archaeplastida
AMTR_s00138p00054750 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.06 Archaeplastida
AT2G16730 BGAL13 glycosyl hydrolase family 35 protein 0.03 Archaeplastida
AT3G53065 No alias D-galactoside/L-rhamnose binding SUEL lectin protein 0.04 Archaeplastida
AT3G53070 No alias Putative membrane lipoprotein 0.04 Archaeplastida
AT3G53075 No alias D-galactoside/L-rhamnose binding SUEL lectin protein 0.03 Archaeplastida
AT3G53080 No alias D-galactoside/L-rhamnose binding SUEL lectin protein 0.04 Archaeplastida
Gb_12091 No alias beta-galactosidase (BGAL) 0.06 Archaeplastida
Gb_35384 No alias Beta-galactosidase 9 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_41532 No alias 1,2-beta-galactosidase. beta-galactosidase (BGAL) 0.05 Archaeplastida
LOC_Os01g65460.1 No alias 1,2-beta-galactosidase. beta-galactosidase (BGAL) 0.02 Archaeplastida
LOC_Os02g12730.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
LOC_Os06g37560.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
LOC_Os06g42310.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
LOC_Os08g43570.1 No alias beta-galactosidase (BGAL) 0.05 Archaeplastida
MA_10427427g0010 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
MA_217488g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c15_7440V3.1 No alias beta galactosidase 9 0.02 Archaeplastida
Pp3c9_9350V3.1 No alias beta galactosidase 9 0.02 Archaeplastida
Solyc02g078950.4.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Solyc02g084720.3.1 No alias beta-galactosidase (BGAL) 0.09 Archaeplastida
Solyc03g121540.3.1 No alias beta-galactosidase (BGAL) 0.01 Archaeplastida
Solyc06g062580.3.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Solyc10g055470.2.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Zm00001e000496_P002 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Zm00001e003992_P005 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e010258_P001 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Zm00001e020528_P001 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Zm00001e024694_P002 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Zm00001e024944_P002 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Zm00001e037281_P001 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Zm00001e039014_P001 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Neighborhood
BP GO:0015689 molybdate ion transport IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000922 Lectin_gal-bd_dom 764 841
IPR031330 Gly_Hdrlase_35_cat 36 340
No external refs found!