GSVIVT01009935001

Description : DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica

Gene families : OG0000758 (Archaeplastida) Phylogenetic Tree(s): OG0000758_tree ,
OG_05_0007084 (LandPlants) Phylogenetic Tree(s): OG_05_0007084_tree ,
OG_06_0007464 (SeedPlants) Phylogenetic Tree(s): OG_06_0007464_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01009935001
Cluster	HCCA: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00121p00103870	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana	0.07	Archaeplastida
AT1G16280	AtRH36, SWA3, RH36	RNA helicase 36	0.09	Archaeplastida
AT4G16630	No alias	DEA(D/H)-box RNA helicase family protein	0.04	Archaeplastida
Cpa\|evm.model.tig00000792.35	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.11	Archaeplastida
Cpa\|evm.model.tig00020848.20	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cre10.g420900	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.19	Archaeplastida
Cre12.g505200	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.06	Archaeplastida
Gb_16576	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.08	Archaeplastida
Gb_23737	No alias	SSU processome assembly factor (SWA3)	0.05	Archaeplastida
Gb_36370	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os03g46610.1	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.04	Archaeplastida
LOC_Os07g43980.1	No alias	SSU processome assembly factor (SWA3)	0.08	Archaeplastida
LOC_Os12g29660.1	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.11	Archaeplastida
MA_6520706g0010	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.02	Archaeplastida
Mp1g19410.1	No alias	SSU processome assembly factor (SWA3)	0.14	Archaeplastida
Mp4g20180.1	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.11	Archaeplastida
Mp4g21330.1	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.12	Archaeplastida
Pp3c16_16520V3.1	No alias	RNA helicase 36	0.04	Archaeplastida
Pp3c1_37280V3.1	No alias	DEA(D/H)-box RNA helicase family protein	0.07	Archaeplastida
Pp3c9_14310V3.1	No alias	DEA(D/H)-box RNA helicase family protein	0.09	Archaeplastida
Smo107914	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.03	Archaeplastida
Solyc04g081580.4.1	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis...	0.14	Archaeplastida
Solyc10g005520.3.1	No alias	SSU processome assembly factor (SWA3)	0.07	Archaeplastida
Solyc10g007550.3.1	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.09	Archaeplastida
Zm00001e010143_P002	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.09	Archaeplastida
Zm00001e013281_P004	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.09	Archaeplastida
Zm00001e035639_P002	No alias	SSU processome assembly factor (SWA3)	0.11	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0004177	aminopeptidase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
CC	GO:0005732	small nucleolar ribonucleoprotein complex	IEP	Neighborhood
CC	GO:0005737	cytoplasm	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008565	protein transporter activity	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0030145	manganese ion binding	IEP	Neighborhood
CC	GO:0030684	preribosome	IEP	Neighborhood
MF	GO:0031369	translation initiation factor binding	IEP	Neighborhood
CC	GO:0032040	small-subunit processome	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0032977	membrane insertase activity	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
CC	GO:0034457	Mpp10 complex	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044452	nucleolar part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	149	294
IPR001650	Helicase_C	504	608

External Links

No external refs found!

GSVIVT01009935001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation