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Description : Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01009974001 | |
| Cluster | HCCA: Cluster_232 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00059p00167980 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g33990... | 0.03 | Archaeplastida | |
| MA_10257685g0010 | No alias | Pentatricopeptide repeat-containing protein DOT4,... | 0.03 | Archaeplastida | |
| MA_265921g0010 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
| Mp8g01790.1 | No alias | ssDNA-binding protein (OSB) | 0.02 | Archaeplastida | |
| Pp3c27_5540V3.1 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Archaeplastida | |
| Smo93321 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | Archaeplastida | |
| Solyc01g081110.4.1 | No alias | Pentatricopeptide repeat-containing protein At1g08070,... | 0.04 | Archaeplastida | |
| Solyc03g114010.3.1 | No alias | Pentatricopeptide repeat-containing protein At2g29760,... | 0.03 | Archaeplastida | |
| Solyc07g009220.2.1 | No alias | Pentatricopeptide repeat-containing protein At2g34400... | 0.03 | Archaeplastida | |
| Zm00001e033335_P001 | No alias | Pentatricopeptide repeat-containing protein At5g61800... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000123 | histone acetyltransferase complex | IEP | Neighborhood |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Neighborhood |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Neighborhood |
| MF | GO:0004590 | orotidine-5'-phosphate decarboxylase activity | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006206 | pyrimidine nucleobase metabolic process | IEP | Neighborhood |
| BP | GO:0006207 | 'de novo' pyrimidine nucleobase biosynthetic process | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006473 | protein acetylation | IEP | Neighborhood |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0009112 | nucleobase metabolic process | IEP | Neighborhood |
| MF | GO:0015035 | protein disulfide oxidoreductase activity | IEP | Neighborhood |
| MF | GO:0015036 | disulfide oxidoreductase activity | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| BP | GO:0016573 | histone acetylation | IEP | Neighborhood |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Neighborhood |
| MF | GO:0016829 | lyase activity | IEP | Neighborhood |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | Neighborhood |
| MF | GO:0016831 | carboxy-lyase activity | IEP | Neighborhood |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Neighborhood |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Neighborhood |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Neighborhood |
| BP | GO:0018208 | peptidyl-proline modification | IEP | Neighborhood |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | Neighborhood |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | Neighborhood |
| BP | GO:0019856 | pyrimidine nucleobase biosynthetic process | IEP | Neighborhood |
| CC | GO:0031248 | protein acetyltransferase complex | IEP | Neighborhood |
| BP | GO:0043543 | protein acylation | IEP | Neighborhood |
| CC | GO:0044451 | nucleoplasm part | IEP | Neighborhood |
| BP | GO:0046112 | nucleobase biosynthetic process | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
| CC | GO:1902493 | acetyltransferase complex | IEP | Neighborhood |
| CC | GO:1990234 | transferase complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 102 | 124 |
| IPR002885 | Pentatricopeptide_repeat | 128 | 157 |
| IPR002885 | Pentatricopeptide_repeat | 635 | 658 |
| IPR002885 | Pentatricopeptide_repeat | 228 | 258 |
| IPR002885 | Pentatricopeptide_repeat | 462 | 488 |
| IPR002885 | Pentatricopeptide_repeat | 535 | 558 |
| IPR002885 | Pentatricopeptide_repeat | 301 | 321 |
| IPR002885 | Pentatricopeptide_repeat | 329 | 358 |
| IPR002885 | Pentatricopeptide_repeat | 360 | 387 |
| IPR002885 | Pentatricopeptide_repeat | 560 | 606 |
| IPR033753 | GCV_H/Fam206 | 814 | 909 |
| No external refs found! |