GSVIVT01010362001

Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 OS=Arabidopsis thaliana

Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0008312 (LandPlants) Phylogenetic Tree(s): OG_05_0008312_tree ,
OG_06_0009801 (SeedPlants) Phylogenetic Tree(s): OG_06_0009801_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01010362001
Cluster	HCCA: Cluster_196

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00166450	evm_27.TU.AmTr_v1...	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Archaeplastida
AMTR_s00090p00083520	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome...	0.02	Archaeplastida
AMTR_s00110p00073830	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome...	0.03	Archaeplastida
AT1G27900	No alias	RNA helicase family protein	0.03	Archaeplastida
AT3G62310	No alias	RNA helicase family protein	0.03	Archaeplastida
Gb_11931	No alias	RNA helicase (Prp22)	0.03	Archaeplastida
LOC_Os01g11370.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Archaeplastida
LOC_Os06g09280.1	No alias	RNA helicase (Prp22)	0.04	Archaeplastida
LOC_Os08g24760.1	No alias	RNA helicase (Prp2)	0.03	Archaeplastida
MA_5383g0010	No alias	RNA helicase (Prp16)	0.02	Archaeplastida
MA_8723931g0010	No alias	RNA helicase (Prp16)	0.02	Archaeplastida
Mp1g21130.1	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.02	Archaeplastida
Mp3g17320.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Archaeplastida
Mp4g16380.1	No alias	RNA helicase (Prp2)	0.02	Archaeplastida
Mp4g18940.1	No alias	RNA helicase (Prp22)	0.02	Archaeplastida
Pp3c15_1470V3.1	No alias	RNA helicase family protein	0.02	Archaeplastida
Pp3c23_12820V3.1	No alias	RNA helicase family protein	0.04	Archaeplastida
Pp3c23_5290V3.1	No alias	RNA helicase family protein	0.02	Archaeplastida
Pp3c24_1890V3.1	No alias	RNA helicase family protein	0.02	Archaeplastida
Pp3c24_70V3.1	No alias	RNA helicase family protein	0.05	Archaeplastida
Pp3c9_18320V3.1	No alias	RNA helicase family protein	0.03	Archaeplastida
Solyc09g097820.3.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	Archaeplastida
Zm00001e016478_P002	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	Archaeplastida
Zm00001e028404_P001	No alias	RNA helicase (Prp22)	0.03	Archaeplastida
Zm00001e035576_P001	No alias	E3 ubiquitin ligase (RBR-Helicase)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006188	IMP biosynthetic process	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Neighborhood
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016842	amidine-lyase activity	IEP	Neighborhood
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0046040	IMP metabolic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007502	Helicase-assoc_dom	404	514
IPR011709	DUF1605	563	644
IPR011545	DEAD/DEAH_box_helicase_dom	11	167
IPR001650	Helicase_C	208	339

External Links

No external refs found!

GSVIVT01010362001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation