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  5. GSVIVT01010510001

GSVIVT01010510001


Description : RNA biosynthesis.transcriptional activation.CAMTA transcription factor


Gene families : OG0000551 (Archaeplastida) Phylogenetic Tree(s): OG0000551_tree ,
OG_05_0000809 (LandPlants) Phylogenetic Tree(s): OG_05_0000809_tree ,
OG_06_0003865 (SeedPlants) Phylogenetic Tree(s): OG_06_0003865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010510001
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00173360 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.CAMTA... 0.04 Archaeplastida
AMTR_s00057p00042800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.CAMTA... 0.03 Archaeplastida
AT2G22300 CAMTA3, SR1 signal responsive 1 0.04 Archaeplastida
AT4G16150 No alias calmodulin binding;transcription regulators 0.03 Archaeplastida
AT5G09410 EICBP.B, CAMTA1 ethylene induced calmodulin binding protein 0.03 Archaeplastida
Gb_35291 No alias transcription factor (CAMTA) 0.03 Archaeplastida
LOC_Os01g69910.1 No alias transcription factor (CAMTA) 0.09 Archaeplastida
LOC_Os03g09100.1 No alias transcription factor (CAMTA) 0.05 Archaeplastida
LOC_Os03g27080.1 No alias transcription factor (CAMTA) 0.1 Archaeplastida
LOC_Os04g31900.1 No alias transcription factor (CAMTA) 0.07 Archaeplastida
MA_10437204g0010 No alias transcription factor (CAMTA) 0.02 Archaeplastida
MA_162775g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c3_35530V3.1 No alias signal responsive 1 0.03 Archaeplastida
Pp3c4_5270V3.1 No alias signal responsive 1 0.02 Archaeplastida
Solyc01g060140.4.1 No alias transcription factor (CAMTA) 0.03 Archaeplastida
Zm00001e002794_P002 No alias transcription factor (CAMTA) 0.05 Archaeplastida
Zm00001e006934_P003 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e012888_P005 No alias transcription factor (CAMTA) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004560 alpha-L-fucosidase activity IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015928 fucosidase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR020683 Ankyrin_rpt-contain_dom 643 717
IPR002909 IPT_dom 427 509
IPR005559 CG-1_dom 12 125
IPR000048 IQ_motif_EF-hand-BS 828 846
IPR000048 IQ_motif_EF-hand-BS 851 870
No external refs found!