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  5. GSVIVT01010625001

GSVIVT01010625001


Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000101 (Archaeplastida) Phylogenetic Tree(s): OG0000101_tree ,
OG_05_0000037 (LandPlants) Phylogenetic Tree(s): OG_05_0000037_tree ,
OG_06_0000043 (SeedPlants) Phylogenetic Tree(s): OG_06_0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010625001
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AT1G07900 LBD1 LOB domain-containing protein 1 0.04 Archaeplastida
AT2G30340 LBD13 LOB domain-containing protein 13 0.03 Archaeplastida
GSVIVT01003547001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
GSVIVT01018486001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.14 Archaeplastida
GSVIVT01032592001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
Gb_10524 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
Gb_19383 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_23688 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_29853 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_127139g0010 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Pp3c20_10200V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.02 Archaeplastida
Pp3c22_5950V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Archaeplastida
Solyc03g112430.1.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Solyc05g048740.3.1 No alias transcription factor (AS2/LOB) 0.07 Archaeplastida
Solyc06g071660.3.1 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
Solyc06g082310.3.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Zm00001e030195_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 4 101
No external refs found!